PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_9AEA9BDEA.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 338aa    MW: 36657.1 Da    PI: 6.5851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_9AEA9BDEA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.00011109154554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            + erE+  Rd +N+ f+eL e+l  +     + + Ka iL+ +++ +++L
  Traes_2AS_9AEA9BDEA.1 109 KAEREKHKRDLLNDLFSELDEMLEAD----RQTNGKACILTDTTRILRDL 154
                            579********************997....57788888998888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-10102174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.439104154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-7109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAHASSPRHR PRNGTGTPRA PPPLFFFFFF STLRHCANQG QRSQAAATPF LQSPSIRDVC  60
GAGQGMVAML PAARGDAAPA ASAGAADKLV HGPVTDGKCK KKAPRMIHKA EREKHKRDLL  120
NDLFSELDEM LEADRQTNGK ACILTDTTRI LRDLLSQLES LRKENSTLQN ESHYVTMERN  180
ELQDENGVLR NEILELQNEL ATLPAGNPGW GHATAGSPHP AGTVFPSQQP MQPTTIASAV  240
FPLQQPLQQT TILEHPYAPP PPPRELKLFP DAASDIEGLE PSEDQEAANH IARPLARYPT  300
QSALWPVSLG LPRMEDEQCS SGTTGSSKEG SSSASSRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5342750.0KJ534275.1 Triticum aestivum isolate Ta_IRO3_2 putative transcription factor bHLH mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557817.11e-127PREDICTED: transcription factor bHLH47
TrEMBLW5B3F20.0W5B3F2_WHEAT; Uncharacterized protein
STRINGMLOC_72614.11e-149(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.34e-23bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]